Ernesto Aparicio-Puerta

Postdoc @ Chair for Clinical Bioinformatics.

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I am broadly interested on the analysis of small RNAs through sequencing, particularly miRNAs but also tRNAs and tRNA fragments. As part of my work at Chair for Clinical Bioinformatics, I have focused on cataloguing all human isomiRs, miRNA variants that can arise through post-transcriptional processing and editing.

Previously, I completed my PhD at University of Granada, where I was advised by Michael Hackenberg and worked on miRNA-seq analysis tools for quantification and quality control, supported by an iPFIS fellowship. I also visited other labs at the Cancer Center Amsterdam and University of Michigan, the latter thanks to a Fulbright PhD Scholarship.

In my spare time, I try to play as much tennis as I can. I also enjoy travelling, learning new languages and spending quality time with friends and family.

selected publications

2023

  1. NAR
    isomiRdb: microRNA expression at isoform resolution
    Ernesto* Aparicio-Puerta, Pascal* Hirsch, Georges P Schmartz, Tobias Fehlmann, Verena Keller, and 4 more authors
    Nucleic Acids Research, 2023
  2. G&D
    ALL-tRNAseq enables robust tRNA profiling in tissue samples
    Chantal Scheepbouwer, Ernesto Aparicio-Puerta, Cristina Gomez-Martin, Heleen Verschueren, Monique Eijndhoven, and 6 more authors
    Genes \& Development, 2023

2020

  1. NAR
    mirnaQC: a webserver for comparative quality control of miRNA-seq data
    Ernesto Aparicio-Puerta, Cristina Gómez-Martı́n, Stavros Giannoukakos, José Marı́a Medina, Juan Antonio Marchal, and 1 more author
    Nucleic Acids Research, 2020

2019

  1. NAR
    sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
    Ernesto Aparicio-Puerta, Ricardo Lebrón, Antonio Rueda, Cristina Gómez-Martı́n, Stavros Giannoukakos, and 6 more authors
    Nucleic acids research, 2019